DeePathology® STUDIO

Rapid AI creation

made available for every pathologist

  • Powerful AI algorithms

    The DeePathology® STUDIO is an interactive Do it Yourself platform for AI in pathology. Researchers and pathologists can create powerful AI solutions for histological image analysis and use these algorithms to create powerful analytics on new pathology slides. Create proof of concepts (PoC) for most problems - in 5 minutes, no computer coding required!

  • State-of-the-art neural networks

    We are leveraging state of the art neural networks and deep learning algorithms to make sure that you can create the most powerful solutions in the shortest time with the lowest amount of data.

  • Lightning-fast annotation

    Do you want to annotate thousands of cells in just a few days? With the DeePathology® STUDIO, you can achieve this goal using our innovative “Deep Interactive Online Active Learning”.

  • High data security

    The DeePathology® STUDIO is easy to use and fun while keeping your data private. It is installed on your local computer or laptop, so you retain full control over your sensitive data without having to send it to a remote server.

  • Versatile and flexible

    Detect and classify cells and other objects, segment tissue regions and classify image tiles - all in one product. Combine modes to create multi-layered solutions, for example precise cell quantification within specific tissue regions.

The ping pong Workflow:

Pathologist vs. DeePathology® STUDIO

Annotate

Annotate examples from different categories, using the fast annotation modes in the DeePathology® STUDIO.

Interact

Interact with the DeePathology® STUDIO by running it on field of views, correcting mistakes and quickly adding new training data using the powerful Interactive Online Active Learning engine.

Analyze

Once you are ready to go, you can apply your algorithm to new slides and create powerful analytic reports.

DeePathology® STUDIO Objects Mode

  • Object segmentation

    Create algorithms that detect the boundaries of objects and classify them into unlimited categories.

  • Optimized for small data

    Annotate as few as four to six examples from each category to get started. Then run the algorithm and correct mistakes - your proof of concept solution is ready in minutes.

  • Annotation magic

    The DeePathology® STUDIO also finds objects for you and displays them in the gallery. The gallery leverages an extremely powerful Active Learning Engine, suggesting you the most important examples to annotate. All you have to do is to set their category and you will obtain a high-quality balanced dataset in no time.

Previous
Next
Previous
Next

DeePathology® STUDIO Cells Mode

  • Cell detection and classification

    Create algorithms that detect and classify different types of cells and nuclei, and then detect millions of them in new slides. The cells mode leverages our powerful built-in Cell Detection building blocks that let you get accurate detections in challenging real-life scenarios.

  • Powerful metrics

    Monitor the performance of your algorithm in real-time - you automatically obtain basic validation analytics for each epoch.

  • Annotation magic

    Using the gallery, the DeePathology® STUDIO makes sure that you are annotating the most important cells. With the AI mode, you can annotate thousands of cells in just a few minutes. And it is not just the quantity of cells - these are high quality images that will make your dataset diverse, and improve your algorithms the most. All you have to do is sit back, drink some coffee, and correct mistakes from time to time in the gallery.

DeePathology® STUDIO Regions mode

  • Region segmentation

    Create region segmentation algorithms for detecting regions of different types, for example different tissues or tumor regions vs. healthy tissue.

  • Multilayered analyses

    You can then detect these region types in new slides, and combine the algorithm with other DeePathology® STUDIO modes to count different types of cells and objects within the different regions.

Previous
Next
Previous
Next

DeePathology® STUDIO Tiles Mode

  • Tile classification

    Quickly annotate tiles (small squares) with single clicks in the viewer.

  • Optimized for speed

    Use the gallery to annotate thousands of tiles from different slides in just minutes. Annotating tiles is simple, fast, and lets you create powerful solutions in record time.

Highly Configurable

To adapt to challenging real life scenarios, there are many more different settings and modes in DeePathology® STUDIO, for changing magnification, controlling tissue detection, algorithms sensitivities and more.

API for Super Users

The API for the DeePathology® STUDIO lets you run the algorithms created with DeePathology® STUDIO from code. 

This allows connecting the solutions developed with DeePathology® STUDIO to any analytic pipeline, and use DeePathology® STUDIO generated algorithms as part of a larger process, for example to predict patient outcomes. 

This also lets you run DeePathology® STUDIO generated algorithms on huge scales on your HPC to quickly deploy these algorithms on thousands of slides.

One AI Platform -

Countless Pathology Use Cases

H&E
  • Quantify tumor infiltrating lymphocytes (TILs)
  • Segment tissue in tumor and healthy tissue
  • Detect glandular structures, such as glomeruli, acini, …
  • Quantify mitotic figures
  • Segment the growth plate region in bone sections
  • Detect red blood cells
  • Segment lung tissue and quantify cells in wall regions
  • Detect granulated and degranulated cells in skin cancer
  • Detect regions with high lymphocyte infiltration in tumor sections
IHC
  • Quantify Ki67 positive cells and calculate the stain ratio
  • Segment positive and negative regions, for example in FoxP3, CD7 and other immunostains
  • Detect different types of beta-amyloid plaques in Alzheimer’s disease research
  • Quantify glia cells in neuroscience research, including astrocytes and microglia
Other stains
  • Quantify cells of interest in in-situ hybridization (ISH) stains
  • Detect Helicobacter pylori in H&E or Giemsa stained slides
  • Detect regions infected with Mycobacterium tuberculosis in Ziehl-Neelsen stained slides for veterinary TB surveillance

Frequently Asked Questions:

DeePathology® STUDIO currently runs on Windows, and requires an NVIDIA GPU with 4GB or more RAM.
The machine can sit inside your lab, without the need to send your slides outside.

We support all the major scanner WSI formats (.svs, .ndpi, .tiff, .bif, .mrxs and more), and also regular images (.png, .jpeg, .bmp and so on).

Please contact us for further information.